rs48840521 SNP Detail

Summary

• ID
  rs48840521
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAGCTGT CAGCCAAGCC AGCAAGCCCA GAGCTCACGT
  AGATAAATAG GACAGTCCCG TCACCAAATG GGAAGACAGC ACCCTCTACC CCCACCCCGC
  M
  CCCAACAACA CACACTTGTC AAAGATCCTT GGGAGAGGAA AAGAATATAT CAAACTCAGG
  CCAAAACCAA AATAAACTTT TCGCGCCAGA ACATCTACG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136852105	ENSMUSSNP1114260	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323137452	CHEV_9_99777050	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48840521					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	161 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	within coordinates
Rr685463	regulatory region 685463	903 bp distal
Rr685464	regulatory region 685464	472 bp distal
Rr685465	regulatory region 685465	within coordinates
Rr685466	regulatory region 685466	1152 bp proximal
Sox14	SRY (sex determining region Y)-box 14	461 bp upstream
Tssr91083	transcription start site region 91083	438 bp upstream
Tssr91084	transcription start site region 91084	419 bp upstream