rs48840793 SNP Detail

Summary

• ID
  rs48840793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89816095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGGCACA GGGGAAAGCA
  TGGGCTCACT TTCAGAGCAC TTATTCAGGA GCATAGCGCT GAGTACTGCA GGCCCTTTGG
  ATCATAGGCC CTCCCATTGG GAACATGGAG CCATATGGAG GTAGATAGCT TTGGACGTGA
  CTTTAGCTCC AAGGCCAGGT CCCATAGTGT CAACATCTTT TTTCAAAAAT TATTTATCAT
  Y
  ATGTGTGTGC ATGGAGAGGT GGGAGCACTT GTGTGGAGAT CAGAAGACAG TTTCAAGGAA
  TTGGGTCTCT TTTTCTACCC TTATGTGTGT GCTGAGGATT GAAATTAGGT AACCTTTCCC
  AGACATCATG CATATAAAGG GTGAGTTTAA TTTTATTGCA TTCTGAGTAT TGATCATCTT
  AGCACAAGAA CTAATCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss61031647	NES16093353	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs48840793					SNP	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031647	NES16093353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89816095 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67723	transcription start site region 67723	1339 bp downstream
Tssr67724	transcription start site region 67724	821 bp downstream
Tssr67725	transcription start site region 67725	779 bp downstream
Tssr67726	transcription start site region 67726	764 bp downstream
Tssr67727	transcription start site region 67727	700 bp downstream
Tssr67728	transcription start site region 67728	1414 bp upstream
Tssr67729	transcription start site region 67729	1563 bp upstream