rs48840862 SNP Detail

Summary

• ID
  rs48840862
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156262679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGT CTTCGTGGTC CCGCTGCTCG
  M
  CTCGGCCTCT GAGCTCTGCC TAGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148072161	ENSMUSSNP4558561	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss320579295	CHEV_2_156246495	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48840862					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156262679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	within coordinates
Epb41l1	erythrocyte membrane protein band 4.1 like 1	150 bp upstream
Rr55936	regulatory region 55936	within coordinates
Tssr21156	transcription start site region 21156	8 bp downstream
Tssr21157	transcription start site region 21157	78 bp upstream
Tssr21158	transcription start site region 21158	279 bp upstream
Tssr21159	transcription start site region 21159	293 bp upstream
Tssr21160	transcription start site region 21160	316 bp upstream
Tssr21161	transcription start site region 21161	324 bp upstream
Tssr21162	transcription start site region 21162	357 bp upstream
Tssr21163	transcription start site region 21163	370 bp upstream
Tssr21164	transcription start site region 21164	403 bp upstream