rs48841147 SNP Detail

Summary

• ID
  rs48841147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAACTGA GAATAAGAAG
  CTCATATGAG AGGGAGCTGT GTGCATGAAG GTGTGGGCAC ATGTAAGAGG TTCTGGGAGT
  GTGAAAGACC ACCCAAACAC ACAGTATCCC TCCATACCAG CTGCAGCGGG CGCTCAGCTG
  TGCCTGGGTG TGCTGTTGGC TGCTTGTGCC TAGGAAGGAA TGCAGGCTCT CTGTCGCTTG
  Y
  TCCTCCCCTT TTGCCTCCTC TCCCTAAGCA TCTCTGAGTG ACCATGCCTA TTTCTCTCTG
  CTTCCTAGTG TGTGTGGCTT GTGGGAGCCC TGGGCTCATT TCCTGGTCTC TCTGCCGTAG
  TGTGCATTTC TAGAAATGGT TTAAAAATTC TCAGCGACTG GTAAGAGAGA GAAATCGAGT
  TTCTTTTTCT TTTTTCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135874502	ENSMUSSNP5402818	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48841147					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	873 bp distal
Fam241a	family with sequence similarity 241, member A	1073 bp upstream
Rr398009	regulatory region 398009	823 bp downstream
Rr584896	regulatory region 584896	1377 bp distal
Rr584897	regulatory region 584897	582 bp distal
Tssr35607	transcription start site region 35607	1883 bp upstream
Tssr35608	transcription start site region 35608	1163 bp upstream
Tssr35609	transcription start site region 35609	1126 bp upstream
Tssr35610	transcription start site region 35610	1059 bp upstream