rs48841393 SNP Detail

Summary

• ID
  rs48841393
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45235210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAGTGC TAGACTCTGA
  CCATGGTCTA GCCCATGCAC TTTCTCCTTT GGCAGTTCTT AAAACTCAGG GTTGCTGGGA
  AAGAGGGGTG CCTCAGAACC CCTCTGGGCT TGCTCTCTGG AGGAGATAGG AAGAAGGAAA
  CAGTGAAGAC AGCACAAGAA TGAGATCACA TGACTAGACC AAGTGACTGC CTCAAACTGG
  M
  GTCTTGGGCA CATCCAGAGC CCTCTGGTCC TGGGCCATCT CATGCTGAAA GAAAGCTTGG
  CTTAGTGGGG TCTCAAGATT CTCTTGTCTG AGGGTATCCC CAGAGTGATG GCTTTAAAAG
  GGAGTAGCTC TAGGAGGGAG CTTCTGCAGC CTGTCTTAGG CAAGGACAGT GGTCACTGCA
  GTGGCCACCG GACAGTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136409279	ENSMUSSNP95859	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48841393					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45235210 () rs orientation: forward

Symbol	Name	Function Class
Lncbate3	brown adipose tissue enriched long noncoding RNA 3	1833 bp upstream
Tmprss13	transmembrane protease, serine 13	within coordinates