rs48841635 SNP Detail

Summary

• ID
  rs48841635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGAAAG AACAGGATGA
  CATAGTGACC ATTAAAGTCT CTTTATACAG ACATCTGCTT TCTACCTGTT CCTTCATATC
  AATTCTCATG AGCAAGACAG ATGTGCAAGA CAGATGTGAA AAGGAGAATC CCTTTCTTCT
  TGTTGCATTT GTTAGAGAAT TGATCTGTAC AGTCTAAAAA GAGGTCTTTC AGGTTATGGC
  R
  AGACCATCAG ACAATGCTGT GGACTTTTAG CAATGGGAAC AAGTCATTTT ACTTATGTCC
  CAGTAATACA TACATGTGCA GTCCTTCTGA TGCCTGATAG ATATTTTCTT ATGTTGGATT
  TTGGTTGTTA TTACATTCAC TCTTGTTCTT CTTCATGCAT GTAAGCCATG TCCCTTGTAT
  TTCCTTGCAC TTAGTCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936901	NES16189355	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48841635					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936901	NES16189355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260308 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	569 bp downstream
Tssr58809	transcription start site region 58809	43 bp upstream
Tssr58810	transcription start site region 58810	69 bp upstream
Tssr58811	transcription start site region 58811	105 bp upstream
Tssr63019	transcription start site region 63019	1777 bp upstream
Tssr63020	transcription start site region 63020	845 bp upstream
Tssr63021	transcription start site region 63021	767 bp upstream
Tssr63022	transcription start site region 63022	728 bp upstream
Tssr63023	transcription start site region 63023	673 bp upstream
Tssr63024	transcription start site region 63024	575 bp upstream
Tssr63025	transcription start site region 63025	543 bp upstream
Tssr63026	transcription start site region 63026	522 bp upstream
Tssr63027	transcription start site region 63027	484 bp upstream
Tssr63028	transcription start site region 63028	459 bp upstream
Tssr63029	transcription start site region 63029	431 bp upstream
Tssr63030	transcription start site region 63030	375 bp upstream
Tssr63031	transcription start site region 63031	345 bp upstream
Tssr63032	transcription start site region 63032	314 bp upstream
Tssr63033	transcription start site region 63033	300 bp upstream
Tssr63034	transcription start site region 63034	274 bp upstream
Tssr63035	transcription start site region 63035	259 bp upstream
Tssr63036	transcription start site region 63036	192 bp upstream
Tssr63037	transcription start site region 63037	159 bp upstream
Tssr63038	transcription start site region 63038	134 bp upstream
Tssr63039	transcription start site region 63039	66 bp upstream
Tssr63040	transcription start site region 63040	22 bp upstream
Tssr63041	transcription start site region 63041	16 bp downstream
Tssr63042	transcription start site region 63042	41 bp downstream
Tssr63043	transcription start site region 63043	51 bp downstream
Tssr63044	transcription start site region 63044	73 bp downstream
Tssr63045	transcription start site region 63045	164 bp downstream
Tssr63046	transcription start site region 63046	183 bp downstream
Tssr63047	transcription start site region 63047	206 bp downstream
Tssr63048	transcription start site region 63048	234 bp downstream
Tssr63049	transcription start site region 63049	249 bp downstream
Tssr63050	transcription start site region 63050	273 bp downstream
Tssr63051	transcription start site region 63051	325 bp downstream
Tssr63052	transcription start site region 63052	1838 bp downstream
Tssr63053	transcription start site region 63053	1948 bp downstream