rs48842096 SNP Detail

Summary

• ID
  rs48842096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164475911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTGCCC CGTGCTCCTT
  CCTAACCCAA TTCCTCACTC AATCTTATCC TTGCCCTGAG ATGAGTGGCA TCTTTCAAGA
  AGCTCCTTCC TAACCCAATT CCTCACTCAA TCTTATCCTT GCCCTGAGAT GAGCGGCATC
  TTTCAAGAAG CTCAAATGCT GCACGGTGAG AGGTTTAGCG TAGGGTCTGT AGTCCATTCC
  R
  CACCAGCTTG CTTAGTGGAC TCGTGTAGGC TCATCCACCA GTTTGTGCAT ATTTATGCTC
  CTTTACTATT TTTTTAAAAC CTATTTATTT GTTGTTATTT TATGTATACA AGTGTTTTAC
  CGGGATGTAG GTATAGGCAA CATGTGCATG CAGTGGCCAG GAGACCAGAA GAGGGTGTCG
  GATCCCTTGA AAGTGGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148229631	ENSMUSSNP1161789	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48842096					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164475911 () rs orientation: forward

Symbol	Name	Function Class
Gm74576	predicted gene, 74576	1618 bp upstream
Rr40355	regulatory region 40355	1290 bp proximal
Rr52775	regulatory region 52775	1272 bp proximal
Wfdc16	WAP four-disulfide core domain 16	716 bp downstream