rs48843456 SNP Detail

Summary

• ID
  rs48843456
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG GGAAATTGCT TGTGTGTGTG
  K
  GGGGGGGTGT CCTGCTGGGA AGGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147462470	ENSMUSSNP4023516	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321318843	CHEV_4_130374402	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48843456					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545798 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	1634 bp downstream
Tssr39264	transcription start site region 39264	1576 bp downstream
Tssr39265	transcription start site region 39265	104 bp upstream
Tssr39266	transcription start site region 39266	126 bp upstream
Tssr39267	transcription start site region 39267	144 bp upstream
Tssr39268	transcription start site region 39268	168 bp upstream
Tssr39269	transcription start site region 39269	215 bp upstream
Tssr39270	transcription start site region 39270	240 bp upstream
Tssr39271	transcription start site region 39271	279 bp upstream
Tssr39272	transcription start site region 39272	301 bp upstream
Tssr39273	transcription start site region 39273	361 bp upstream
Tssr39274	transcription start site region 39274	403 bp upstream
Tssr39275	transcription start site region 39275	419 bp upstream
Tssr39276	transcription start site region 39276	455 bp upstream
Tssr39277	transcription start site region 39277	471 bp upstream
Tssr39278	transcription start site region 39278	484 bp upstream
Tssr43599	transcription start site region 43599	202 bp downstream
Tssr43600	transcription start site region 43600	225 bp downstream
Tssr43601	transcription start site region 43601	282 bp downstream