rs48843521 SNP Detail

Summary

• ID
  rs48843521
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40716768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAAATGAA CACAGGGTGC TGGTTCTCAG CTATGAAATC
  TATGGGTGCA GATGGGGACT TGGCCTTCTA AGTCCATTTG CTTGTATAAT CTAGTGTTAA
  G
  CTGCCACCTA GTGGCCAGCC TTGTTTCAGA GGTCTGCATG CAGCAAAGCC TAGTAACTTG
  ATGTAGTACT AATAATTAGG GGAGAATAAA GGCTCGCCT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136338461	ENSMUSSNP6909268	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322919716	CHEV_9_40613555	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48843521					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40716768 () rs orientation: forward

Symbol	Name	Function Class
Hspa8	heat shock protein 8	270 bp downstream
Rr194757	regulatory region 194757	633 bp proximal
Rr206240	regulatory region 206240	567 bp distal
Rr206241	regulatory region 206241	within coordinates
Rr401324	regulatory region 401324	729 bp upstream
Snord14c	small nucleolar RNA, C/D box 14C	1804 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	1392 bp downstream
Snord14e	small nucleolar RNA, C/D box 14E	635 bp downstream
Tssr84485	transcription start site region 84485	1237 bp downstream
Tssr84486	transcription start site region 84486	721 bp downstream
Tssr84487	transcription start site region 84487	1166 bp upstream