rs48843644 SNP Detail

Summary

• ID
  rs48843644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130913156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGT GACTCGGATG TGGGGCTTGG
  Y
  GGGAGCATCG TGAAGTTGGT TGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598505	ENSMUSSNP3589197	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48843644					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130913156 () rs orientation: forward

Symbol	Name	Function Class
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	within coordinates
Tssr26345	transcription start site region 26345	77 bp upstream
Tssr26346	transcription start site region 26346	within coordinates
Tssr26347	transcription start site region 26347	26 bp downstream
Tssr26348	transcription start site region 26348	143 bp downstream
Tssr26349	transcription start site region 26349	1387 bp downstream
Tssr26350	transcription start site region 26350	1400 bp downstream
Tssr26351	transcription start site region 26351	1417 bp downstream