rs48846410 SNP Detail

Summary

• ID
  rs48846410
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48767700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC GCCCAACAGC CCAGTCAAGC
  M
  TGTGCCTACA GCAGCAATAC CTCCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62766581	NES17348295	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A	A	C		A	A	A		A
ss145717239	ENSMUSSNP3450429	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					A
ss325408729	CHEV_17_48599997	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48846410					SNP	C	C	A	A	A	C	A	A	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62766581	NES17348295	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48767700 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	1439 bp upstream
Rr528301	regulatory region 528301	1951 bp distal
Rr528302	regulatory region 528302	151 bp distal
Rr528303	regulatory region 528303	1003 bp proximal
Tssr145120	transcription start site region 145120	1683 bp upstream
Unc5cl	unc-5 family C-terminal like	within coordinates