rs48846422 SNP Detail

Summary

• ID
  rs48846422
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32524379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAATTT CCTATTGTAA
  GGACAGTGAC TCCCTTTCAT TAGGAACCAC CCTAATGACC CCACATTACC TTAATTTCCA
  TTTAAAGACC ATAGCTCCCA GCCAGCCAGA TGGCCTGGTA GGTAAAGGCG CTTGCCATCC
  TGAATCTAAT ACCTATACCC ACATACTGGG AGGAGAGAAT GAAGTCCTAC AAGCTCTCCT
  T
  GGCCACACAT TTAAAAGAAA AAAATAGTAA ACAAAGTAAT TAAAAATAAA AGGTATCCAA
  TTACCAATTA CTTTTTGTTT TAATTATTTT TATAAAGTTT TTTGTTTTGT GATTTTGGTT
  ATTTATTTAT TTATTTATTT ATGGTTTCCT TTGTTTTATT TTTAGACAGG GTCTCATGTA
  GCCCAGGGCT GCTGGCCTGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148847971	ENSMUSSNP2011283	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48846422					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32524379 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	within coordinates
Cpgi5422	CpG island 5422	1441 bp distal
Gmds	GDP-mannose 4, 6-dehydratase	1656 bp upstream
Rr369665	regulatory region 369665	1476 bp downstream
Rr476844	regulatory region 476844	1648 bp distal
Rr476845	regulatory region 476845	1166 bp distal
Tssr121995	transcription start site region 121995	1854 bp upstream
Tssr121996	transcription start site region 121996	1832 bp upstream
Tssr121997	transcription start site region 121997	1736 bp upstream