rs48848629 SNP Detail

Summary

• ID
  rs48848629
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176717406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGCCCCC CCCCTTAGGC
  AAGCCCTGAA GTTTAAAGTG TCACATGCTG AATCTAACAC CCTTTACACT CACCTCACCA
  GCCAAGAGTG CAAACAGGCA TGGTAGAAAA GAGAAAAAAG TGGGAAAGAA AAGATGGGAA
  AGATTTTAGA AGATGACCTT GTAATGGTGT TTGTGTTAAG AATTGTGTTT GGGTCATTCT
  W
  TACATGTCCT CAAATCCTGT GACTCGGAAG GGGCAACTGT GATCAAAACC CATCAGGATA
  ACAAACACTG CAGTTATGTT CAGAGGGAAA CACAGTAGTG GTCTTTGAAA CCTCTGATTA
  GTAAAGTTTT CTTCTCTCTC CTATTGCTGC TTACTAGCAA GTACTGTCAC TTAGGGTTTT
  TCAGAGAATG CCTTTTGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60349124	NES15853554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48848629					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349124	NES15853554	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176717406 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	within coordinates
Rr423928	regulatory region 423928	1031 bp proximal
Sdccag8	serologically defined colon cancer antigen 8	within coordinates