rs48849527 SNP Detail

Summary

• ID
  rs48849527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60940351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATT TCCAGGGACT CTGGGACAGA
  Y
  GGACTCTGGA GCAGGGGTGG GGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325640676	CHEV_18_60966933	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48849527					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60940351 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1396 bp proximal
Rr405671	regulatory region 405671	1322 bp downstream
Rr405672	regulatory region 405672	466 bp downstream
Tssr5344	transcription start site region 5344	392 bp upstream
Tssr151330	transcription start site region 151330	1311 bp downstream
Tssr151331	transcription start site region 151331	1292 bp downstream
Tssr151332	transcription start site region 151332	255 bp downstream
Tssr151333	transcription start site region 151333	256 bp upstream
Tssr151334	transcription start site region 151334	620 bp upstream
Tssr151335	transcription start site region 151335	629 bp upstream
Tssr151336	transcription start site region 151336	663 bp upstream
Tssr151337	transcription start site region 151337	717 bp upstream
Tssr151338	transcription start site region 151338	773 bp upstream
Tssr151339	transcription start site region 151339	952 bp upstream
Tssr151340	transcription start site region 151340	1628 bp upstream
Tssr151341	transcription start site region 151341	1651 bp upstream
Tssr151342	transcription start site region 151342	1683 bp upstream
Tssr151343	transcription start site region 151343	1743 bp upstream
Tssr153493	transcription start site region 153493	776 bp downstream
Tssr153494	transcription start site region 153494	798 bp downstream
Tssr153495	transcription start site region 153495	1014 bp downstream