rs48850156 SNP Detail

Summary

• ID
  rs48850156
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134070225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT TTTTTTTTCT ACAGGATTCC
  G
  GGAAGAGTGG GTTTTGTGGT CATCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321346954	CHEV_4_133898829	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48850156					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134070225 () rs orientation: forward

Symbol	Name	Function Class
Rr601645	regulatory region 601645	within coordinates
Rr601646	regulatory region 601646	1893 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	267 bp upstream
Tssr39548	transcription start site region 39548	229 bp upstream
Tssr39549	transcription start site region 39549	284 bp upstream
Tssr39550	transcription start site region 39550	579 bp upstream
Tssr39551	transcription start site region 39551	609 bp upstream
Tssr39552	transcription start site region 39552	684 bp upstream
Tssr39553	transcription start site region 39553	718 bp upstream
Tssr39554	transcription start site region 39554	769 bp upstream
Tssr39555	transcription start site region 39555	968 bp upstream
Tssr39556	transcription start site region 39556	1088 bp upstream