rs48850815 SNP Detail

Summary

• ID
  rs48850815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101268070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCAGGAAG AGAAAGAAGG ATCAGGAGGA GGGAGAGTGT
  TTTATGTATC GAGCAAACCA GATGCAATCT ATGTCTAACC GGCTTCAGTT GTGTCTGTGT
  Y
  TTTAGATACG ACACACTCAA TAATAATAAT AGACCAACTA GTGTAATGAG TAGCCAGTTA
  AAGGCGATTA ATTCTGCTTC CAGATAGTCT CCACTGTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132727245	ENSMUSSNP1993470	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48850815					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101268070 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	within coordinates
Tssr3676	transcription start site region 3676	913 bp downstream
Tssr105099	transcription start site region 105099	756 bp downstream
Tssr105100	transcription start site region 105100	614 bp downstream
Tssr105101	transcription start site region 105101	601 bp downstream
Tssr105102	transcription start site region 105102	574 bp downstream
Tssr105103	transcription start site region 105103	63 bp downstream
Tssr105104	transcription start site region 105104	52 bp downstream
Tssr105105	transcription start site region 105105	33 bp downstream
Tssr105106	transcription start site region 105106	13 bp downstream
Tssr105107	transcription start site region 105107	62 bp upstream