rs48851900 SNP Detail

Summary

• ID
  rs48851900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTGTCTT CCAAGTGCTA AGAATAAAGA ACTGTGTCCT
  CCCTGATTGG CTTTTGATGT TTGATTGTTG TTTAATGCTT GATGTCTTGA GAATTCGGCT
  Y
  ACAGTGGGCG GTTCATCCTT GGTAGGATAG GAAAGCAGAT GGAGCCCCAC TCTTCCAGAG
  CCACAGCTTC TCCAGTTTCC TGCCTCAGGT TCCTGCCTTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss60847295	NES16004166	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs48851900					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847295	NES16004166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190423 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	783 bp upstream
Tssr49319	transcription start site region 49319	619 bp downstream
Tssr49320	transcription start site region 49320	607 bp downstream
Tssr53954	transcription start site region 53954	689 bp upstream
Tssr53955	transcription start site region 53955	673 bp upstream
Tssr53956	transcription start site region 53956	654 bp upstream
Tssr53957	transcription start site region 53957	637 bp upstream
Tssr53958	transcription start site region 53958	582 bp upstream
Tssr53959	transcription start site region 53959	569 bp upstream
Tssr53960	transcription start site region 53960	503 bp upstream
Tssr53961	transcription start site region 53961	404 bp upstream
Tssr53962	transcription start site region 53962	386 bp upstream
Tssr53963	transcription start site region 53963	347 bp upstream
Tssr53964	transcription start site region 53964	307 bp upstream
Tssr53965	transcription start site region 53965	282 bp upstream
Tssr53966	transcription start site region 53966	577 bp downstream
Tssr53967	transcription start site region 53967	603 bp downstream