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rs48852283 SNP Detail
Summary
  • ID
    rs48852283
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:171488370 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCAGG AGGATTCTAA GTACACCTAT
    Y
    CCAATTGCTC TCTGCTTATG GACTC                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss120001876 PARCsnp_1.15015 PARC_SEQ INBRED f SNP T C
ss120004175 PARCsnp_1.04356 PARC_SEQ INBRED f SNP T C
ss146171848 ENSMUSSNP2314816 ENSEMBL ENSEMBL_Sanger f SNP C C C
ss320120230 CHEV_1_173590933 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs48852283 SNP C C T C C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:171488370 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm70589 predicted gene, 70589 within coordinates
Rr423376 regulatory region 423376 1836 bp distal
Rr423377 regulatory region 423377 1874 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory