rs48852380 SNP Detail

Summary

• ID
  rs48852380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153621513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACTCCA AACCGTATTT
  CCGTTCTTCC AAGGTCTGAA CTGGCATCTG CAGCAGGCTG GAAAGGGCAG ATAGTGCTTA
  GACCTCAGGA TGTCCCCGGC CAAACTGTCA CCAGCTGGAG CTATCAGCCA CTTCCGCCCT
  ACCTTACCTA GTGCCTTAAA CTAGGACGGG CAAGTCCTTT GGGGGTACAG GAAGAAGGAC
  R
  GATTGGGGCC TACCTATCTT CCCTTCACTC GGGATTTGGA ACCTAGTGCA GTGACAGATG
  TTGGCGAATA TTACCCACCA TCCAGTTTAG GTCCGGTTTC CTGCGACAGC TGCCTAAGGC
  ATGCTGGGGC ACTCCGCCAC ACCCCCCCCC CCCAACTTCC GTACTGCTGG GTTATTTCCC
  TTCATCCTGT GGTATTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148003963	ENSMUSSNP6629036	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320565069	CHEV_2_153605329	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48852380					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153621513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	239 bp distal
Efcab8	EF-hand calcium binding domain 8	338 bp upstream
Gm75501	predicted gene, 75501	within coordinates
Rr567738	regulatory region 567738	within coordinates
Rr567739	regulatory region 567739	130 bp proximal
Tssr20916	transcription start site region 20916	358 bp downstream
Tssr20917	transcription start site region 20917	342 bp downstream
Tssr20918	transcription start site region 20918	314 bp downstream