rs48852678 SNP Detail

Summary

• ID
  rs48852678
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120542498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTT TCAGAAGTCC TTTTTGGGGG
  A
  TAGGGGGCGG TGAAAGTAAT AAACT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145318774	ENSMUSSNP4344905	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319933347	CHEV_1_122511346	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48852678					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120542498 () rs orientation: forward

Symbol	Name	Function Class
2610027F03Rik	RIKEN cDNA 2610027F03 gene	within coordinates
Cpgi675	CpG island 675	921 bp distal
Cpgi676	CpG island 676	140 bp distal
Gm34352	predicted gene, 34352	within coordinates
Rr417218	regulatory region 417218	353 bp distal
Rr417219	regulatory region 417219	within coordinates
Rr417220	regulatory region 417220	685 bp proximal