rs48853289 SNP Detail

Summary

• ID
  rs48853289
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153423681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCA ATGGTCAGCT CTGGCTACAC
  W
  GACTCCCATC TTCTTGTGCT TCGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60820878	NES16434197	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	T	A	A	T	A	A
ss145744813	ENSMUSSNP4007225	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48853289					SNP	A	A	A	A	A	A	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60820878	NES16434197	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153423681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	1550 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	487 bp downstream
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr372265	regulatory region 372265	1147 bp downstream
Rr420696	regulatory region 420696	within coordinates
Rr420697	regulatory region 420697	1507 bp proximal
Tssr14276	transcription start site region 14276	1762 bp downstream
Tssr14277	transcription start site region 14277	1799 bp downstream
Tssr14278	transcription start site region 14278	1883 bp downstream
Tssr14279	transcription start site region 14279	1903 bp downstream