rs48853480 SNP Detail

Summary

• ID
  rs48853480
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:8544959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCATGT GGTTCCCTCC
  CCACTACTCC TGTTGGGATA CCAGGTCACC ACAGGGGATC TAATGCTTGT CACCACAGGG
  GGAAGGAGAG CTATGCTTGG TCAATGTCTA CAGCTCCTGC TACCTTGAGG AACTCTGCTC
  AACAGGCACG ATCTGATCAG GTTCCAGTTT TTGCTCCAGT GATACCTTTT GTGTGATCAG
  W
  ACTCTAAGGG TCTTTGAAGA AACCCACCAT AGTGCACTCT CTAGTTCTAC CAAGTCCTCT
  GGTCTTGAGC ACGGATTACT TAGGGAGAGA ATGGGCAACC TCCTTCTCAC CCTGGAGCTG
  AGATTAAACG GGGGAGATAG ACCTCAGGAT TTTGTACCCA TAGGATAGAA AAACAGAGAC
  CAGCTCTTTA CTAGTGGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60683956	NES16235417	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48853480					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60683956	NES16235417	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:8544959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21347	CpG island 21347	155 bp distal
Rr206822	regulatory region 206822	within coordinates
Rr211022	regulatory region 211022	1242 bp proximal
Trpc6	transient receptor potential cation channel, subfamily C, member 6	within coordinates
Tssr83785	transcription start site region 83785	733 bp downstream
Tssr83786	transcription start site region 83786	700 bp downstream
Tssr83787	transcription start site region 83787	426 bp downstream