rs48853832 SNP Detail

Summary

• ID
  rs48853832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12503850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGACATC TGTTTGCCCT
  GCCTCCTAGG TGATCTAAGG AAAGCACCAC CACTCCCTGC CTGAATAGTG ACTGTTTGAA
  GAAACAATTG ATACAAGCTA TGAACCTTTT CACACTGTAT TGGATCTTGC TAATGCTTCT
  TGTAACAGCC TCTTAACAGA TGTCTCCAGA GACCAATTAC CACCTGCAGT GGTCTTTACC
  Y
  GTCCACTCTT TGTAAAAAGG TGTCATTACA AAATGTTGCA GTGGAAAAAA AAAATGTTGC
  AGTGGCTGCC CTATACTGAG TCCTACAGGG TTAGAAAGGC ACCTGAGAGA TTTGCAAGAA
  CCCCTAAGGA ACAGGGTGGG GCATCAGACA GGCTACTGTG GCAAGGCATA GTTACAAGGT
  TTCATGGATA GGTAAGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60571595	NES16043244	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48853832					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60571595	NES16043244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12503850 () rs orientation: forward

Symbol	Name	Function Class
Gm56835	predicted gene, 56835	within coordinates
Rr381713	regulatory region 381713	81 bp upstream