rs48853906 SNP Detail

Summary

• ID
  rs48853906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164946157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTATCAT TGAACAAACA AGAAGGCGAA AACTCAGCCA
  ACTTCAAAAC CGTGCCAGTT TGCCCACTCA ACATGGCAGG GCTGGCTTCA AATTTGGTCT
  S
  TTCATCTCCC AAGATGATGG TGACATTCCT CTCCCACACT GGATTACCAT GAGGTCAAGC
  AGGAGGGAAA ATCTGATATG GAAGAAGAGC TTAACGATT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145994736	ENSMUSSNP5625480	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48853906					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164946157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi947	CpG island 947	1904 bp proximal
Gm70481	predicted gene, 70481	477 bp upstream
Rr396491	regulatory region 396491	1671 bp upstream
Rr422319	regulatory region 422319	471 bp proximal
Rr422320	regulatory region 422320	684 bp proximal
Rr422321	regulatory region 422321	1947 bp proximal