rs48854276 SNP Detail

Summary

• ID
  rs48854276
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42310547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTCTTCA GGATAAAACG AGGAACACGA CTCTAGGGCA
  TCCCAGTCCC GGTGCTCTCG GCATCCTCTT CCCCCCCCCC CCCCCGCAAC TCCTCCCCTC
  M
  TCCAGCGAGC CCCAAGCAGA GGAAATGATT TTTCCTATGA AATGAGTCTG GATCTGGTGT
  CCGTGTTGAG CCTGGAGCTG GAGGGAAGGG GGCAGCCTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132042357	ENSMUSSNP2772067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48854276					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42310547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2743	CpG island 2743	867 bp distal
Cpgi2744	CpG island 2744	107 bp proximal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	37 bp upstream
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	within coordinates
Rr445406	regulatory region 445406	1140 bp proximal
Tssr100974	transcription start site region 100974	1 bp downstream
Tssr100975	transcription start site region 100975	9 bp upstream
Tssr100976	transcription start site region 100976	217 bp upstream
Tssr100977	transcription start site region 100977	717 bp upstream
Tssr100978	transcription start site region 100978	1038 bp upstream
Tssr100979	transcription start site region 100979	1109 bp upstream
Tssr100980	transcription start site region 100980	1513 bp upstream
Tssr100981	transcription start site region 100981	1538 bp upstream
Tssr100982	transcription start site region 100982	1565 bp upstream
Tssr100983	transcription start site region 100983	1602 bp upstream