rs48854634 SNP Detail

Summary

• ID
  rs48854634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76369915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA GTCAGTATTC CTCTGCCCAC
  Y
  GAACACTGCA AAAAGAAGGC ATACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146590151	ENSMUSSNP4290660	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321170952	CHEV_4_76097582	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48854634					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76369915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	905 bp distal
Gm42303	predicted gene, 42303	within coordinates
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr101140	regulatory region 101140	114 bp distal
Rr101141	regulatory region 101141	85 bp proximal
Tssr37647	transcription start site region 37647	767 bp downstream
Tssr37648	transcription start site region 37648	215 bp downstream
Tssr42162	transcription start site region 42162	1893 bp upstream
Tssr42163	transcription start site region 42163	1182 bp upstream
Tssr42164	transcription start site region 42164	1063 bp upstream