rs48856041 SNP Detail

Summary

• ID
  rs48856041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126357833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGC AATCAGGCAG AGGATTTGTA
  M
  GACACTGGGG CCTCAGCACA CACCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145876367	ENSMUSSNP631024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48856041					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126357833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19709	CpG island 19709	555 bp proximal
Mapk3	mitogen-activated protein kinase 3	965 bp upstream
Rr655591	regulatory region 655591	450 bp proximal
Rr655592	regulatory region 655592	1446 bp proximal
Tssr69058	transcription start site region 69058	937 bp upstream
Tssr69059	transcription start site region 69059	952 bp upstream
Tssr69060	transcription start site region 69060	1021 bp upstream
Tssr69061	transcription start site region 69061	1068 bp upstream
Tssr69062	transcription start site region 69062	1119 bp upstream
Tssr69063	transcription start site region 69063	1930 bp upstream
Tssr69064	transcription start site region 69064	1986 bp upstream