rs48856052 SNP Detail

Summary

• ID
  rs48856052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135707653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATC TGAGAGGGAA CTGGGGCTTG
  Y
  CGAAGCGCTT GCACTATTTC AAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133816868	ENSMUSSNP1389643	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321989795	CHEV_6_135680673	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48856052					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135707653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	1703 bp proximal
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63773	transcription start site region 63773	775 bp upstream
Tssr63774	transcription start site region 63774	608 bp downstream