rs48857301 SNP Detail

Summary

• ID
  rs48857301
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:84068892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT AACCTGCTGA GCCAACTCAC
  W
  GCCAAGAGCT GGTCTATTTG AATAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss132477339	ENSMUSSNP6716540	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323769361	CHEV_11_83991568	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48857301					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84068892 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	Intron
Cpgi3430	CpG island 3430	1108 bp proximal
Rr453130	regulatory region 453130	802 bp proximal
Rr453131	regulatory region 453131	1363 bp proximal
Rr453132	regulatory region 453132	1910 bp proximal
Tssr103797	transcription start site region 103797	413 bp downstream
Tssr103798	transcription start site region 103798	1545 bp upstream
Tssr103799	transcription start site region 103799	1592 bp upstream
Tssr103800	transcription start site region 103800	1726 bp upstream
Tssr103801	transcription start site region 103801	1786 bp upstream
Tssr103802	transcription start site region 103802	1800 bp upstream