rs48857459 SNP Detail

Summary

• ID
  rs48857459
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTATGAAAT AGTTTACAAA CCATTTCTTG GTTTGTAAAA
  TGCAGAAAAT ACCCACCTCA CTTGGATATT AGAAGGCTTA AAGACTGGTG CAGTGCATAC
  M
  AAGAACTCAG TATAATTTGG GCCTACCCAT TCAATTGAGT GTTCAAGTAC GAGCCAGAAA
  AGTTGCTACT GTGCTTAAGT GTAGAAAGAT TCAGCTTCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148095675	ENSMUSSNP1073688	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss320585276	CHEV_2_157106361	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48857459					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	786 bp distal
Mroh8	maestro heat-like repeat family member 8	1076 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	1576 bp downstream
Rr568459	regulatory region 568459	1469 bp distal
Rr568460	regulatory region 568460	677 bp distal
Tssr21228	transcription start site region 21228	1600 bp downstream
Tssr21229	transcription start site region 21229	1561 bp downstream
Tssr21230	transcription start site region 21230	1495 bp downstream
Tssr21231	transcription start site region 21231	1308 bp downstream
Tssr27165	transcription start site region 27165	1107 bp upstream
Tssr27166	transcription start site region 27166	1070 bp upstream
Tssr27167	transcription start site region 27167	1047 bp upstream