rs48857573 SNP Detail

Summary

• ID
  rs48857573
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135675710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG TTTCCATATT ATTTTTCATT
  T
  CTTTGCCTAT CCTGTCCCTG TGCTA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145544765	ENSMUSSNP1212954	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss319992935	CHEV_1_137644549	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48857573					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135675710 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419262	regulatory region 419262	1205 bp distal
Rr419263	regulatory region 419263	292 bp distal
Tssr222	transcription start site region 222	1174 bp downstream