rs48857904 SNP Detail

Summary

• ID
  rs48857904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGATCTG TAGGACTGGC
  CCCTTCACAT GTTCTAGCAG TTCATAGATG GGGTAGATGT TGGGGTGGGC CAACTCAAAG
  TACTGGGTCT GGGCCTGGAT GGAAGCTGAG TTGGTCAGCT TTTTGCCCAG GCGAGGGGTA
  GGGCCAGCTC TTCCAGTTGC TGCATCTGAT GAGAAACAGG GCCAGCTCTG CACAGCTCTC
  R
  GATGTCAACA TGGCTTCAGG TGACAGTCTA GACCAGGGAT GTCTACATCA GAAGCATACT
  TTTTATAATC TTACAGATTC ACTATCTCAA ATTTAAAATG TCACATATTT TAAAAATAAT
  TGCAAGGATA GTTGACGAAA TACTCACTGA GAACATTGAT TTCAGACAAA ATCATTTTCC
  TGTGACCCTT CACATTTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647227	ENSMUSSNP1953475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss322398744	CHEV_7_117910049	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48857904					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365742 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1671 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	142 bp downstream
Cpgi19579	CpG island 19579	1548 bp proximal
Rr653308	regulatory region 653308	1258 bp proximal
Rr653309	regulatory region 653309	1886 bp proximal
Tssr68503	transcription start site region 68503	1528 bp upstream
Tssr68504	transcription start site region 68504	1571 bp upstream
Tssr68505	transcription start site region 68505	1603 bp upstream
Tssr68506	transcription start site region 68506	1634 bp upstream