rs48858329 SNP Detail

Summary

• ID
  rs48858329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164793482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT TAGTTAGGTG TGTCACTTCC
  Y
  TCCCATATAA AGTGGCGGCG TGCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148233655	ENSMUSSNP976792	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320607208	CHEV_2_164777062	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48858329					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164793482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1063 bp distal
Cpgi12680	CpG island 12680	321 bp distal
Cpgi12681	CpG island 12681	1552 bp proximal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	377 bp proximal
Rr569777	regulatory region 569777	1061 bp proximal
Rr569778	regulatory region 569778	1868 bp proximal
Tssr21691	transcription start site region 21691	401 bp downstream
Tssr21692	transcription start site region 21692	341 bp downstream
Tssr21693	transcription start site region 21693	861 bp upstream