rs48858371 SNP Detail

Summary

• ID
  rs48858371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64994058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCGTGA TGGAGCTATG
  CCTGTCCCAG AGTCTTGGGT GTCAAATTAA CAATGTGTCT GCAGGTTTTC TGATAAACCT
  CCAGTGCGTG AATCTACCAA ATAAAACACC ACAAGCCATC GTACTGTCAC AGCACTAAAG
  GCAAGCGTGA GTGAGGCTGC TGTGTGGCAA TAAAGAATTC TGAGCATATA ATGTTGTGAA
  Y
  ACTGATACCT GAGCCATTTT AATTGTGGCA AAATACTCAA AACATAAAAT TTACCATGGT
  AACCACTAAG CCAAGCATTG TCATGCAGCC CAACCCCCAC TGGTCTTTCA TCTTGCAGTC
  CACCCATTCA ACAAGAACTT CCCCCTCATG CCGGGCGTGG TGGCACACGC CTTTAATCCC
  AGCACTTGGG AGGCAGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60745015	NES16383989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48858371					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60745015	NES16383989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64994058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	1526 bp proximal
Gm51627	predicted gene, 51627	1603 bp upstream
Plekhm3	pleckstrin homology domain containing, family M, member 3	within coordinates
Rr412356	regulatory region 412356	1339 bp proximal
Rr412357	regulatory region 412357	1614 bp proximal
Rr412358	regulatory region 412358	1846 bp proximal
Rr412359	regulatory region 412359	1915 bp proximal
Tssr11945	transcription start site region 11945	1812 bp downstream
Tssr11946	transcription start site region 11946	1832 bp downstream
Tssr11947	transcription start site region 11947	1908 bp downstream
Tssr11948	transcription start site region 11948	1924 bp downstream