rs48860638 SNP Detail

Summary

• ID
  rs48860638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88971471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGTTGTG GCTCTAGAAG
  TATTTGGAAT TAAAAAAAAA TGCTTTGACT CGAATCCATT TGAGATTAGA CTAGGCATTG
  CATGGATACT CTACGCTACA CCTATGCACT ACCTATGTAT GCGCTTCGGA GGGATGGACT
  GTTGGGGACT ATCCTTCAGA AACCTGTGTT GCAGCCAGAT GCCAATCTCT TTGGGACTCA
  R
  GTGGTGGGTA GTTCTGGTCT TCTCAGCTCC CCAGGATGTG ACTGTTTTTC CAGGGGTGTA
  GGTGTGTGGG ATCTATTCCA AACCTGCTCT GATAGTTGCC TCGCTGAGGC AGCCACTCCA
  GTGAAGGTTA GCATATGGAA ATGTTTTCGG AGTGGGTCGC CTAGACTCCA GTGGTAAGGA
  AAGAACAGGC TTCCAAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61911643	NES17093093	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48860638					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911643	NES17093093	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88971471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	1070 bp distal
Cpgi5920	CpG island 5920	286 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	within coordinates
Gm38504	predicted gene, 38504	832 bp upstream
Rr483401	regulatory region 483401	1700 bp distal
Tssr120562	transcription start site region 120562	1832 bp downstream
Tssr120563	transcription start site region 120563	1772 bp downstream
Tssr120564	transcription start site region 120564	1761 bp downstream
Tssr120565	transcription start site region 120565	1749 bp downstream
Tssr120566	transcription start site region 120566	1729 bp downstream
Tssr120567	transcription start site region 120567	1676 bp downstream
Tssr120568	transcription start site region 120568	1668 bp downstream
Tssr120569	transcription start site region 120569	1633 bp downstream
Tssr120570	transcription start site region 120570	1613 bp downstream
Tssr120571	transcription start site region 120571	1591 bp downstream
Tssr120572	transcription start site region 120572	1438 bp downstream
Tssr120573	transcription start site region 120573	1410 bp downstream
Tssr120574	transcription start site region 120574	1376 bp downstream
Tssr120575	transcription start site region 120575	239 bp upstream
Tssr120576	transcription start site region 120576	862 bp upstream
Tssr123374	transcription start site region 123374	1557 bp upstream