rs48861170 SNP Detail

Summary

• ID
  rs48861170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAAAGT TTGATTCCCA
  GCCCCCACTT GGAGGCTCAC CACCTCCTTA CACACCAGGC ATGCATTTGG TGCACAGATA
  TGCATGCACA CAATAATAAA AATAAATCTA AAATTTAAAC CTTTTGTTAT TGGTGGGGAG
  TGGGGGGGGG GCTACCATAG TGCACAGGTG GGGGTCAGGG GACAACTTTG AAGGGTCTGT
  Y
  CTCTCCTTCC ACTGTGGCTC TTGGACCTAA ATTCAAGCGG TCAGGCTTGT ATGGCAAGTG
  TTCTGACTCA CTGAACCATC TTACGGCTGC TGTTGTTGTT GTTGTTTTTT TTGGTTTTTT
  GTTTTGTTTG TTTTGTTTTT GAGACAGGCT GTTTCTGTGT AACAGAGCCC TGGCTATCCT
  AGACTCACTT CATAGACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss145879517	ENSMUSSNP7062215	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss322451437	CHEV_7_134476510	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs48861170					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932168 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	634 bp downstream
Tssr69201	transcription start site region 69201	574 bp upstream
Tssr69202	transcription start site region 69202	606 bp upstream
Tssr69203	transcription start site region 69203	654 bp upstream
Tssr69204	transcription start site region 69204	785 bp upstream
Tssr69205	transcription start site region 69205	1717 bp upstream