rs48861305 SNP Detail

Summary

• ID
  rs48861305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101006315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAC AATCTGGGCT ACATAGCTGA
  W
  CCAAGGCTAG CTCAACTGTG TTAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61202774	NES16711436	PERLEGEN	MM_PANEL2	f	SNP	A	T		A	T	A		T
ss148929813	ENSMUSSNP5800344	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321627725	CHEV_5_101287468	CHEVERUD	SCREENING_POP	f	SNP			A				A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs48861305					SNP	A	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61202774	NES16711436	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101006315 () rs orientation: forward

Symbol	Name	Function Class
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr399195	regulatory region 399195	1556 bp downstream
Rr615577	regulatory region 615577	1437 bp distal
Rr615578	regulatory region 615578	1940 bp proximal