rs48861578 SNP Detail

Summary

• ID
  rs48861578
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114952508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT GGCCAATTAC CAATCAAGGC
  D
  TTCCCACAGA CATGTCCACA GAGCC                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145319411	ENSMUSSNP6404886	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss324534387	CHEV_13_115606180	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48861578					SNP	A	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114952508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	1769 bp proximal
Gm34790	predicted gene, 34790	within coordinates
Rr280966	regulatory region 280966	1492 bp proximal
Rr389127	regulatory region 389127	1731 bp downstream