rs48863005 SNP Detail

Summary

• ID
  rs48863005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40505314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGAATA AGGAGGATAC
  GTCTCATTTC ACAAGAGAAT GGTGTTACGT GGTGATACAG TCATGGCTAA AGCGAAATCT
  CTTATTAGTA TATTAACGTG GTTAATATTA TTCTATTAAA TATTATCTGG GCTGGAGAAA
  TGGCTCAGCG ATTAACACAT GTAATTGCCA GCACCTTCAT CAGGTGGCGC ACCACCACCT
  R
  TAACTCCAGC TCCAGGACAT CTGGTGCCCT CTTCTGGCCT CCATGGGCAC TGCGTGCATG
  TGAGAACAAC ATGCAATAGA CCACAGACCA ACAGACCACA GCAATTTAAA TGTAAAACAA
  ATCTTTAAGA TATATTATAG CTATTGTGAT ACAACCAATT ACGTCTCTAG AATCAAATGA
  CTTTCAGGGA GGTTTAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147067349	ENSMUSSNP6343027	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48863005					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40505314 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	693 bp upstream
Rr214674	regulatory region 214674	within coordinates
Rr224698	regulatory region 224698	286 bp proximal
Tssr93026	transcription start site region 93026	669 bp upstream
Tssr93027	transcription start site region 93027	739 bp upstream