rs48864097 SNP Detail

Summary

• ID
  rs48864097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29894372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGG TCTCGCCAGA TCTGAGGACT
  R
  CGGATTCCGG ATCTACAGGG TGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60991870	NES16142338	PERLEGEN	MM_PANEL2	f	SNP	A			A		A	A		A	A	A	G
ss148668662	ENSMUSSNP1880414	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss322132194	CHEV_7_30979966	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48864097					SNP	A	A	G	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991870	NES16142338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29894372 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	1918 bp distal
Cpgi18782	CpG island 18782	906 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	1690 bp upstream
Rr400232	regulatory region 400232	1042 bp downstream
Rr400233	regulatory region 400233	88 bp upstream
Tssr65662	transcription start site region 65662	990 bp downstream
Tssr71697	transcription start site region 71697	1996 bp upstream
Tssr71698	transcription start site region 71698	1965 bp upstream
Tssr71699	transcription start site region 71699	1839 bp upstream
Tssr71700	transcription start site region 71700	1804 bp upstream
Tssr71701	transcription start site region 71701	1580 bp upstream
Tssr71702	transcription start site region 71702	1128 bp upstream
Tssr71703	transcription start site region 71703	914 bp upstream
Tssr71704	transcription start site region 71704	807 bp upstream
Tssr71705	transcription start site region 71705	785 bp upstream
Tssr71706	transcription start site region 71706	73 bp downstream
Tssr71707	transcription start site region 71707	85 bp downstream
Tssr71708	transcription start site region 71708	99 bp downstream
Tssr71709	transcription start site region 71709	274 bp downstream
Tssr71710	transcription start site region 71710	616 bp downstream