rs48865176 SNP Detail

Summary

• ID
  rs48865176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100896509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCGTGC AGATGCATAA
  GCATATTCCA AAAGGGGTCA CGGGGAAACG TTGGCAAGGA GATGCACATC CGGTGGCAGC
  AGGACCGCCC GCTTCTTTCC AAGGCCTCCA CGGCCAGACT CCTGCAGAGG ATGCCACTTT
  AATGAGCACA ATTAAAACGA AAGGTTCTGT GTCACATCAA CTCAAAACCC CAAAACTGAA
  R
  CAGCAGAGTG GTTCCAAAAA CACCATTTAC ATTTCCCATG AACTCGGCTA TTTAAATGAC
  AGATTGGTCA CAAAGCCAAT TTTAAACTGC GGGATTCTTC TCATAGCGTG TTGAGGTCCT
  TCTCCAGCTG CAGCACTGTC TCTCTGAGGG CAGGGTCCTC TGCCCAGTTG GTTTTACTCG
  CCAAAATAAG GCCCTGTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52685834	NES15521458	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48865176					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685834	NES15521458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100896509 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates