rs48865646 SNP Detail

Summary

• ID
  rs48865646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46248580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTCTGTC AGATGTTATA
  ACTGGCTCAG GAGGTGACCT GTGGCCTAGG AGTCTACTCC ATGCTCTGGG CATTGCCCTC
  CATTTGGGTG TGCAAAGCAG CAGGCCCCAC CTTGCATTGT AGAGCATGCC TATGGGAGTG
  TGGGGTGCAC TGGGTGCTTT AAAGAGCTAT GTGGCTCTGT GAGACAGTTA GCAAGAGTTT
  R
  TTAGTAGTAT TCTTTTTAGA TAGACCAGGC TGGCCTTGAA CTCCTGACGA TCCACCTGCC
  CCTGCCTTCT CAGTGCCAGG ATCAAAGGCA TGTGCCACCA TACCCTGCTT CAGTACACTG
  TTTATTTTTA ATTTGTAACA ACAGGAGCAT GCTGAGAGTT TTGTCCTTTA AGCATTTCTG
  GAGGAAGCGT GCATACAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61392174	NES16761229	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48865646					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392174	NES16761229	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46248580 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	307 bp upstream
Rr678124	regulatory region 678124	159 bp proximal
Rr678125	regulatory region 678125	660 bp proximal