rs48865711 SNP Detail

Summary

• ID
  rs48865711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36633256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gacctgagt tagatcccca gaggctgcaa
  gcataagagg aggatccctc tggcctccac gtgtttactg tggtacatgt gcacacGTGT
  GTGCAAAGTG TGAATAAAAT GAGCAGATAA AAACTCACGG AGACGgggtg tggtggcgca
  Y
  gtctttaatc ccagcacttt ggaggcagag gcaggcgaat ttctgagttc aaggccagcc
  tggtctacag agtgagttcc agaacagcca gggctacaca gagaaaccct gtctcgaaaa
  caaacaaaca aacaaacaaa ACTCATGGAa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148928423	ENSMUSSNP226101	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319689124	CHEV_1_36651020	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48865711					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36633256 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Rr409369	regulatory region 409369	728 bp distal
Rr409370	regulatory region 409370	1250 bp proximal
Rr409371	regulatory region 409371	1628 bp proximal
Tssr11268	transcription start site region 11268	837 bp upstream