rs48868161 SNP Detail

Summary

• ID
  rs48868161
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59650744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATTGAAAA TAAGTAGAAG CCTCAGGGTG GCCATGTTAG
  GAACTGCAGA AACCATTCAT AATACTGAAA TTAGAAAAAC ACATGAAAAA AAGACAAATG
  K
  AAGGTCTTTG ACAAGTCATG AAAGAATGTC GAAAGCAGAA TCCAAATGCC AATTCACTAA
  ATTCTACCTA TCTATAAAAC TAGATTGATT AAGCACCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61014609	NES16116737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48868161					SNP	T	T	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014609	NES16116737	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59650744 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr72702	transcription start site region 72702	1987 bp downstream