rs48868777 SNP Detail

Summary

• ID
  rs48868777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118429693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACA TAAGGCCTTA GTTCATTACC
  Y
  AGCAATGAGG CTTGGGGGTG GGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147306158	ENSMUSSNP6374358	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320470629	CHEV_2_118424948	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48868777					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118429693 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12084	CpG island 12084	582 bp distal
Rr397211	regulatory region 397211	875 bp downstream
Rr563273	regulatory region 563273	991 bp distal
Rr563274	regulatory region 563274	440 bp distal
Rr563275	regulatory region 563275	within coordinates
Tssr19562	transcription start site region 19562	986 bp downstream
Tssr19563	transcription start site region 19563	945 bp downstream
Tssr19564	transcription start site region 19564	912 bp downstream