rs48869093 SNP Detail

Summary

• ID
  rs48869093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74510251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTGCCCATAA ATGATAACCT ATTATTGGGA CAGTACTCTC CACATGAAAC
  Y
  ACCCTGACTT CAGAACTAAC TGGCAGCTAC CCTACTACCC TTCTTCATAG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ
ss61846852	NES17778964	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ
rs48869093					SNP	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61846852	NES17778964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74510251 () rs orientation: forward

Symbol	Name	Function Class
Ccdc127	coiled-coil domain containing 127	within coordinates
Lrrc14b	leucine rich repeat containing 14B	within coordinates
Rr482679	regulatory region 482679	1863 bp proximal
Tssr123216	transcription start site region 123216	1788 bp downstream
Tssr123217	transcription start site region 123217	1805 bp downstream
Tssr123218	transcription start site region 123218	1839 bp downstream
Tssr123219	transcription start site region 123219	1861 bp downstream