rs48870195 SNP Detail

Summary

• ID
  rs48870195
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGTTC TGCCTCTGTT
  CCTATACTAA AACTCTCTCC ACATCCTGCC TTAGGCCACC TGAACCCCAC AGTCCCCAGA
  TGCAGGACTC ACCTGACCTG AGTGACCTGA GCCCCCTGGT CCTAGACATC AGAGTAATTA
  TAGACCCAGT GAAGTAGCCC TTCATCTGGG GCCAACCAAA CCCATCCCAA AGTCCCTTGG
  M
  GTCCCCAGTG GCATCCAAGC CTCAGAAACT CAGATGTTTG GAGAGATCTC CACCTTAATT
  CAACTGGATG GGCCCATCTG TAGGATGGTA ATCTTTCAGG CTAGCCTTGG CTAGCATAGT
  GAGACCTGTG ACAAGAGAAG AAGGAAACAG GAGAAGGAGA AAGGAAACAA GAGAGGGACC
  TGCACCTATC CTGTCCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742403	ENSMUSSNP5219650	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48870195					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393658 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	490 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	205 bp upstream
Ighj2	immunoglobulin heavy joining 2	523 bp upstream
Ighj3	immunoglobulin heavy joining 3	906 bp upstream
Ighj4	immunoglobulin heavy joining 4	1471 bp upstream
Tssr115504	transcription start site region 115504	189 bp upstream
Tssr118005	transcription start site region 118005	1491 bp upstream
Tssr118006	transcription start site region 118006	1460 bp upstream
Tssr118007	transcription start site region 118007	1414 bp upstream
Tssr118008	transcription start site region 118008	1387 bp upstream
Tssr118009	transcription start site region 118009	1376 bp upstream
Tssr118010	transcription start site region 118010	1238 bp upstream
Tssr118011	transcription start site region 118011	1140 bp upstream
Tssr118012	transcription start site region 118012	905 bp upstream
Tssr118013	transcription start site region 118013	890 bp upstream
Tssr118014	transcription start site region 118014	786 bp upstream
Tssr118015	transcription start site region 118015	690 bp upstream
Tssr118016	transcription start site region 118016	536 bp upstream
Tssr118017	transcription start site region 118017	196 bp upstream
Tssr118018	transcription start site region 118018	338 bp downstream
Tssr118019	transcription start site region 118019	355 bp downstream
Tssr118020	transcription start site region 118020	411 bp downstream
Tssr118021	transcription start site region 118021	551 bp downstream
Tssr118022	transcription start site region 118022	583 bp downstream
Tssr118023	transcription start site region 118023	748 bp downstream