rs48870379 SNP Detail

Summary

• ID
  rs48870379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59700739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA CTAGCCGGAG CGAGCAGCGT
  Y
  GCGTCCCCCG CAGGCGACTA GGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132241360	ENSMUSSNP1299335	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323699342	CHEV_11_59623415	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48870379					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59700739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	within coordinates
Flcn	folliculin	within coordinates
Gm16062	predicted gene 16062	167 bp upstream
Tssr101863	transcription start site region 101863	194 bp upstream
Tssr101864	transcription start site region 101864	374 bp upstream
Tssr101865	transcription start site region 101865	396 bp upstream
Tssr108246	transcription start site region 108246	66 bp upstream
Tssr108247	transcription start site region 108247	113 bp downstream