rs48870983 SNP Detail

Summary

• ID
  rs48870983
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:68460557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT GGTGAGCTTC AGGTTAAGTA
  M
  GGAACTATAT CAAATAAGAT GAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134197431	ENSMUSSNP5043040	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48870983					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:68460557 () rs orientation: forward

Symbol	Name	Function Class
Aff2	AF4/FMR2 family, member 2	within coordinates
Rr9940	regulatory region 9940	1158 bp distal
Tssr161151	transcription start site region 161151	1612 bp downstream