rs48871179 SNP Detail

Summary

• ID
  rs48871179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45014744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGTGA CTTGGGAAGC
  CTTTACCACT GCCTCTGAGA AATGGGCTGG GGCAGGGTAG CCCGGGCCAG ATCAGCCGTG
  GGCGGCAGAT CCTGGGCGTA GGTACAGGAA AGAGCCCTGA CCTTGAGATC AGAAAGCTCC
  ACTACCTTCA TGAGCTAGGG CTTACTGATT AAGAGCAGGT GTTCAGGAAC CTTTAGAGGA
  R
  AGCAAGATGG ACTTCCTTGT CACAGGGCTT TGAAGTGGAG TTATAAATAG GAGCTGAGAG
  ATTAGTTCAT TTCCCTGAGC TCCAATAGTT TCCCCCTCCC TCCCCCCTCC TTTTCTCCTT
  CCCCCTCTCC ACATTTTAAC TTTTAGACAC TTCTCTTTGG TCCGTTGGCT TCTTGAGTTT
  TGGGTTGCCT TTGTCCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61388968	NES16766747	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48871179					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388968	NES16766747	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45014744 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	within coordinates
Tssr84725	transcription start site region 84725	562 bp downstream
Tssr84726	transcription start site region 84726	390 bp upstream
Tssr84727	transcription start site region 84727	420 bp upstream
Tssr84728	transcription start site region 84728	448 bp upstream